Function reference • infx

Package documentation
`infx`	API access to the InfectX data repository
List openBIS objects Enumerate openBIS for objects used to organize datasets
`list_datasets()` `list_dataset_ids()` `list_references()` `list_dataset_types()`	List datasets and dataset reference objects
`list_experiments()` `list_experiment_ids()` `list_experiment_types()` `as_experiment_id()`	List experiments
`list_material()` `material_id()` `list_material_types()` `as_screening_mat_id()` `as_generic_mat_id()` `extract_well_material()`	List materials
`list_plates()` `list_plate_metadata()` `plate_id()` `as_plate_id()` `list_wells()` `well_id()` `as_well_id()` `well_pos()`	List plates and wells
`list_projects()`	List projects
`list_samples()` `list_sample_types()`	List samples and sample types
Search for openBIS objects Query openBIS for data set, experiment, material and sample objects
`search_openbis()` `search_criteria()` `search_sub_criteria()` `property_clause()` `any_property_clause()` `any_field_clause()` `attribute_clause()` `time_attribute_clause()` `list_property_types()`	Assemble and execute openBIS search queries
List/download openBIS resources List and fetch files, images and feature data
`list_features()` `list_feature_codes()` `fetch_features()`	List and download feature data
`list_files()` `fetch_files()` `read_mat_files()`	List and download files
`fetch_images()` `list_image_metadata()`	List image meta data and download images
`list_download_urls()` `list_datastores()` `list_datastore_urls()`	List data store servers and urls
JSON objects in R Create, display and modify JSON objects returned by openBIS
`print(<json_class>)` `[`(<json_class>) `c(<json_class>)` `rep(<json_class>)` `print(<json_vec>)` `[`(<json_vec>) `[<-`(<json_vec>) `[[`(<json_vec>) `[[<-`(<json_vec>) `c(<json_vec>)` `rep(<json_vec>)` `as_list()`	Base generics for JSON objects
`json_class()` `as_json_class()` `as.json_class()` `rm_json_class()` `as.list(<json_class>)` `is_json_class()` `is.json_class()` `check_json_class()`	Create and validate JSON class objects
`has_fields()` `get_field()` `has_subclass()` `get_subclass()` `remove_null()`	JSON class utilities
`json_vec()` `as_json_vec()` `as.json_vec()` `as.list(<json_vec>)` `is_json_vec()` `is.json_vec()` `has_common_subclass()`	Construct and validate JSON object vectors
Utility functions Assemble JSON-RPC request and issue a POST request to openBIS; parse results; login/logout functionality; helpers for reading downloaded files
`make_requests()` `make_request()` `do_requests_serial()` `do_requests_parallel()` `process_json()` `resolve_references()`	Construct and issue JSON-RPC requests
`login_openbis()` `logout_openbis()` `is_token_valid()`	Create and destroy a login token
`api_url()` `docs_link()`	OpenBIS urls

Reference

Package documentation

List openBIS objects

Search for openBIS objects

List/download openBIS resources

JSON objects in R

Utility functions

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